PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca5917.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NAC
Protein Properties Length: 235aa    MW: 27402.6 Da    PI: 7.8218
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca5917.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM127.31.2e-39141451128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlskkgel 99 
                lppG+rFhPtdee++ eyL+ kv   +l++ +vi+evd ++++Pw+Lp +v   e++ yfF k++ k+++ +k+++r+t sgyWka  ++k++ + ++++
  Dca5917.1  14 LPPGLRFHPTDEEILFEYLRCKVFCLPLPA-SVIPEVDFLNFDPWNLPGNV---EEKRYFFYKKQLKNTRkQKKNQRVTGSGYWKANSSTKQINAPQTHH 109
                79****************************.99***************554...44567777777666651556667*****************984433 PP

        NAM 100 .......vglkktLvfykgrapkgektdWvmheyrl 128
                        glkk++vfy+g+ pkg++t+W mhey+l
  Dca5917.1 110 nnlgnftHGLKKSFVFYQGKPPKGHRTHWYMHEYSL 145
                4566666***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-4210167IPR003441NAC domain
PROSITE profilePS5100544.15514167IPR003441NAC domain
PfamPF023653.6E-2115145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MERQNYVGNS LTKLPPGLRF HPTDEEILFE YLRCKVFCLP LPASVIPEVD FLNFDPWNLP  60
GNVEEKRYFF YKKQLKNTRK QKKNQRVTGS GYWKANSSTK QINAPQTHHN NLGNFTHGLK  120
KSFVFYQGKP PKGHRTHWYM HEYSLHFHQN CEDLNVEDWV ICTVFMKHRT EEVYDSSLLI  180
NEEQCSDNIY SYSMNNVGPS TYDNYCASPT SSSTSVYKVS PYEFNCSGEG NSYSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-311417217170NO APICAL MERISTEM PROTEIN
1ut4_B2e-311417217170NO APICAL MERISTEM PROTEIN
1ut7_A2e-311417217170NO APICAL MERISTEM PROTEIN
1ut7_B2e-311417217170NO APICAL MERISTEM PROTEIN
3swm_A2e-311417220173NAC domain-containing protein 19
3swm_B2e-311417220173NAC domain-containing protein 19
3swm_C2e-311417220173NAC domain-containing protein 19
3swm_D2e-311417220173NAC domain-containing protein 19
3swp_A2e-311417220173NAC domain-containing protein 19
3swp_B2e-311417220173NAC domain-containing protein 19
3swp_C2e-311417220173NAC domain-containing protein 19
3swp_D2e-311417220173NAC domain-containing protein 19
4dul_A2e-311417217170NAC domain-containing protein 19
4dul_B2e-311417217170NAC domain-containing protein 19
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086848.17e-55PREDICTED: NAC transcription factor 25
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.19e-49NAC domain containing protein 83